Prolonged exposure does not increase soil microbial community compositional response to warming along geothermal gradients

Global change is expected to affect soil microbial communities through their responsiveness to temperature. It has been proposed that prolonged exposure to elevated temperatures may lead to progressively larger effects on soil microbial community composition. However, due to the relatively short-term nature of most warming experiments, this idea has been challenging to evaluate. The present study took the advantage of natural geothermal gradients (from +1°C to +19°C above ambient) in two subarctic grasslands to test the hypothesis that long-term exposure (>50 years) intensifies the effect of warming on microbial community composition compared to short-term exposure (5–7 years). Community profiles from amplicon sequencing of bacterial and fungal rRNA genes did not support this hypothesis: significant changes relative to ambient were observed only starting from the warming intensity of +9°C in the long term and +7°C/+3°C in the short term, for bacteria and fungi, respectively. Our results suggest that microbial communities in high-latitude grasslands will not undergo lasting shifts in community composition under the warming predicted for the coming 100 years (+2.2°C to +8.3°C).This work was supported by Research Foundation–Flanders (FWO) [1293114N to JTW, 12B0716N to SV, 11G1615N to NIWL], Icelandic Research Council [163272-051 to BDS], Climate Change Manipulation Experiments in Terrestrial Ecosystems (ClimMani) COST Action [ES1308], the European Research Council grant ERC-SyG-610028 IMBALANCE-P and the University of Antwerp: University Research Fund (BOF).Peer Reviewe

Initial soil community drives heathland fungal community trajectory over multiple years through altered plant-soil interactions

•Dispersal limitation, biotic interactions and environmental filters interact to drive plant and fungal community assembly, but their combined effects are rarely investigated. •This study examines how different heathland plant and fungal colonization scenarios realized via three biotic treatments ‐ addition of mature heathland derived sod, addition of hay and no additions ‐ affect soil fungal community development over six years along a manipulated pH gradient in a large‐scale experiment starting from an agricultural, topsoil removed state. •Our results show that both biotic and abiotic (pH) treatments had a persistent influence on the development of fungal communities, but that sod additions diminished the effect of abiotic treatments through time. Analysis of correlation networks between soil fungi and plants suggests that the reduced effect of pH in the sod treatment, where both soil and plant propagules were added, might be due to plant‐fungal interactions since the sod additions caused stronger, more specific, and more consistent connections compared to no addition treatment. •Based on these results, we suggest that the initial availability of heathland fungal and plant taxa, that reinforce each other, can significantly steer further fungal community development to an alternative configuration, overriding otherwise prominent effect of abiotic (pH) conditions

Global maps of soil temperature

Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1-km2 resolution for 0–5 and 5–15 cm soil depth. These maps were created by calculating the difference (i.e. offset) between in situ soil temperature measurements, based on time series from over 1200 1-km2 pixels (summarized from 8519 unique temperature sensors) across all the world\u27s major terrestrial biomes, and coarse-grained air temperature estimates from ERA5-Land (an atmospheric reanalysis by the European Centre for Medium-Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (−0.7 ± 2.3°C). The observed substantial and biome-specific offsets emphasize that the projected impacts of climate and climate change on near-surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil-related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications

Soil chemistry, temperature and bacterial community composition drive brGDGT distributions along a subarctic elevation gradient

Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are bacterial membrane lipids which can be used to reconstruct past terrestrial mean annual air temperature (MAAT) and soil pH values. To reconstruct these environmental conditions in geological archives, we make use of the brGDGT ratios MBTʹ5ME, CBTʹ and IR, which summarize the structural variation in brGDGT lipids. However, the most recent calibrations between the brGDGT-based temperature proxy MBTʹ5ME and temperature on a global scale are characterized by a residual error between 3.8 °C and 6.0 °C. This lack of accuracy of the MBTʹ5ME-MAAT calibration is often attributed to the difference between soil and atmospheric temperatures. Also, previous studies suggested that the variation of the MBTʹ5ME along chemistry and temperature gradients reflects a possible influence of bacterial community changes. Here, we analyzed the effect environmental variables have on brGDGT signatures collected along five elevation gradients in the north of Sweden and Norway, where MAAT changed between –4.7 °C and 2.7 °C and soil pH varies between 3.3 and 5.7. Specifically, we determined the impact of air and soil temperature, the bacterial community composition and soil chemical characteristics. The range of MBTʹ5ME values encountered (0.30–0.70) results in a wide range of reconstructed temperatures (1–13 °C). The use of in situ soil temperature data spanning one year did not improve the correlation with brGDGT MBTʹ5ME values, compared to using a long-term MAAT dataset. Although a temperature gradient was present, soil chemistry apparently determined brGDGTs concentration and distribution on this local scale. Specifically, soils with high cation exchange capacity (CEC) showed an increased concentration of brGDGT Ia, resulting in increased Community Index (CI) and MBTʹ5ME values, both brGDGT ratios that reflect the degree of methylation. Soils with increased pH (pH range 5–6) had a distinct brGDGT fingerprint with generally decreased MBTʹ5ME values, which resulted in the correlation between MBTʹ5ME and soil pH (r = –0.60, p < 0.01). Contrary to expectations, pH was a better predictor of MBTʹ5ME values than temperature (r = 0.47, r = 0. 44, p < 0.01, with MAAT and mean summer soil temperature (MSST), respectively). Soil pH also shaped the bacterial community composition, and a bio-indicator approach was used to narrow down the proposed bacterial producer of brGDGT lipids in high CI (Acidobacteria subgroups 1 and 3) and high pH soils (Acidobacteria subgroups 6 and 7). Building upon previous research, this confirms that brGDGTs respond to similar changes in bacterial community composition across sites. Because of the interplay between temperature and soil chemistry, the relationship between the MBTʹ5ME and soil temperature is clearly complex at the local scale. Further disentangling these environmental drivers is still essential in the development of the MBTʹ5ME proxy as paleothermometer.ISSN:0146-638

Lipid biomarker temperature proxy responds to abrupt shift in the bacterial community composition in geothermally heated soils

Specific soil bacterial membrane lipids, branched glycerol dialkyl glycerol tetraethers (brGDGTs), are used as an empirical proxy for past continental temperatures. Their response to temperature change is assumed to be linear, caused by physiological plasticity of their, still unknown, source organisms. A well-studied set of geothermally warmed soils (Iceland) shows that the brGDGT fingerprint only changes when the soil mean annual temperature is warmer than 14 °C. This sudden change in brGDGT distribution coincides with an abrupt shift in the bacterial community composition in the same soils. Determining which bacterial OTUs are indicative for each soil cluster shows that Acidobacteria are possible brGDGT producers, together with representatives from the Actinobacteria, Chloroflexi, Gemmationadetes and Proteobacteria. Projecting the lipid fingerprint of the cold and warm bacterial communities onto the global soil calibration dataset creates two distinct soil clusters, in which brGDGTs respond differently to temperature and, especially, soil pH. We show that, on a local scale, a community effect rather than physiological plasticity can be the primary driver of the brGDGT-based paleothermometer along large temperature gradients. This threshold response needs to be taken into account when interpreting brGDGT-based paleo-records

Lipid biomarker temperature proxy responds to abrupt shift in the bacterial community composition in geothermally heated soils

Specific soil bacterial membrane lipids, branched glycerol dialkyl glycerol tetraethers (brGDGTs), are used as an empirical proxy for past continental temperatures. Their response to temperature change is assumed to be linear, caused by physiological plasticity of their, still unknown, source organisms. A well-studied set of geothermally warmed soils (Iceland) shows that the brGDGT fingerprint only changes when the soil mean annual temperature is warmer than 14 °C. This sudden change in brGDGT distribution coincides with an abrupt shift in the bacterial community composition in the same soils. Determining which bacterial OTUs are indicative for each soil cluster shows that Acidobacteria are possible brGDGT producers, together with representatives from the Actinobacteria, Chloroflexi, Gemmationadetes and Proteobacteria. Projecting the lipid fingerprint of the cold and warm bacterial communities onto the global soil calibration dataset creates two distinct soil clusters, in which brGDGTs respond differently to temperature and, especially, soil pH. We show that, on a local scale, a community effect rather than physiological plasticity can be the primary driver of the brGDGT-based paleothermometer along large temperature gradients. This threshold response needs to be taken into account when interpreting brGDGT-based paleo-records

Lipid biomarker temperature proxy responds to abrupt shift in the bacterial community composition in geothermally heated soils

Specific soil bacterial membrane lipids, branched glycerol dialkyl glycerol tetraethers (brGDGTs), are used as an empirical proxy for past continental temperatures. Their response to temperature change is assumed to be linear, caused by physiological plasticity of their, still unknown, source organisms. A well-studied set of geothermally warmed soils (Iceland) shows that the brGDGT fingerprint only changes when the soil mean annual temperature is warmer than 14 °C. This sudden change in brGDGT distribution coincides with an abrupt shift in the bacterial community composition in the same soils. Determining which bacterial OTUs are indicative for each soil cluster shows that Acidobacteria are possible brGDGT producers, together with representatives from the Actinobacteria, Chloroflexi, Gemmationadetes and Proteobacteria. Projecting the lipid fingerprint of the cold and warm bacterial communities onto the global soil calibration dataset creates two distinct soil clusters, in which brGDGTs respond differently to temperature and, especially, soil pH. We show that, on a local scale, a community effect rather than physiological plasticity can be the primary driver of the brGDGT-based paleothermometer along large temperature gradients. This threshold response needs to be taken into account when interpreting brGDGT-based paleo-records

The influence of soil chemistry on branched tetraether lipids in mid- and high latitude soils: Implications for brGDGT- based paleothermometry

Branched glycerol dialkyl glycerol tetraethers (BrGDGTs) are a suite of orphan bacterial membrane lipids commonly used as paleo-environmental proxies for mean annual air temperature (MAT) and pH. Recent calibrations between the Methylation of Branched Tetraethers index (MBT′5ME) and MAT, based on modern surface soils (including peats), show a considerable amount of scatter, especially in mid- and high latitude soils, suggesting that brGDGT signals are influenced by additional environmental and/or biological controls at these sites. Here we test the impact of soil chemical gradients and bacterial community changes (16S rDNA sequence-based) on brGDGT distributions at two grasslands sites (Ossenkampen [NL], ForHot [IS]), and one agricultural site (Craibstone [UK]). In addition to the variation in soil chemistry, the ForHot site experiences belowground warming. Of the studied edaphic parameters, soil pH is the primary factor that explains simultaneous changes in both the bacterial community composition and the brGDGT distribution. Variations in the MBT′5ME at two sites without soil warming indeed correlate strongly to soil pH (r = 0.9–1.0, pH = 4.5–7.3), whereas pH explains part of the variation in the MBT′5ME at the site with soil warming (mean soil temperature ranging between 5 and 14 °C). At all sites, soil pH is positively related with the same brGDGTs (Ib, IIb, IIIb, IIIc, IIa′, IIb′, IIc′, IIIa′, IIb′, IIIc′) and influences the ratio between main brGDGT compounds Ia, IIa and IIIa, impacting the MBT′5ME values. This change in brGDGT distributions coincides with a change in the composition of the bacterial community at all sites. The bacterial clades that vary at the three experimental sites (specifically Acidobacteria subgroups 1, 2, 3, 6, 22) have previously been shown to also respond to soil pH on a global scale. As soil pH changes on geological timescales, the impact of changing pH on the MBT′5ME paleothermometer should be considered when performing paleoclimate studies.ISSN:0016-7037ISSN:1872-953

Shifts in the Abundances of Saprotrophic and Ectomycorrhizal Fungi With Altered Leaf Litter Inputs

International audienceEctomycorrhizal (EcM) and saprotrophic fungi interact in the breakdown of organic matter, but the mechanisms underlying the EcM role on organic matter decomposition are not totally clear. We hypothesized that the ecological relations between EcM and saprotroph fungi are modulated by resources availability and accessibility, determining decomposition rates. We manipulated the amount of leaf litter inputs (No-Litter, Control Litter, Doubled Litter) on Trenched (root exclusion) and Non-Trenched plots (with roots) in a temperate deciduous forest of EcM-associated trees. Resultant shifts in soil fungal communities were determined by phospholipid fatty acids and DNA sequencing after 3 years, and CO2 fluxes were measured throughout this period. Different levels of leaf litter inputs generated a gradient of organic substrate availability and accessibility, altering the composition and ecological relations between EcM and saprotroph fungal communities. EcM fungi dominated at low levels of fresh organic substrates and lower organic matter quality, where short-distances exploration types seem to be better competitors, whereas saprotrophs and longer exploration types of EcM fungi tended to dominate at high levels of leaf litter inputs, where labile organic substrates were easily accessible. We were, however, not able to detect unequivocal signs of competition between these fungal groups for common resources. These results point to the relevance of substrate quality and availability as key factors determining the role of EcM and saprotroph fungi on litter and soil organic matter decay and represent a path forward on the capacity of organic matter decomposition of different exploration types of EcM fungi